A Handy tool to Rank Anti-Cancer Synergistic drugs




Cancer cell lines repository

Example:

Tumor Tissue:(number of cell lines)

Cell_Line_1,Cell_Line_2,Cell_Line_3,...

Cell lines format: Separated by commas! And No spaces in the middle


Tissue:

01:Autonomic Ganglia:(17)

02:Biliary Tract:(7)

03:Bone:(25)

04:Breast:(58)

05:Central Nervous System:(47)

06:Endometrium:(25)

07:Haematopoietic And Lymphoid Tissue:(172)

08:Kidney:(20)

09:Large Intestine:(56)

10:Liver:(26)

11:Lung:(168)

12:Oesophagus:(25)

13:Ovary:(48)

14:Pancreas:(43)

15:Pleura:(9)

16:Prostate:(8)

17:Salivary Gland:(2)

18:Skin:(59)

19:Small Intestine:(1)

20:Soft Tissue:(16)

21:Stomach:(34)

22:Thyroid:(11)

23:Upper Aerodigestive Tract:(29)

24:Urinary Tract:(22)


Autonomic Ganglia:(17)

CHP126,CHP212,IMR32,KELLY,KPNRTBM1,KPNSI9S,KPNYN,MHHNB11,NB1,NH6,SHSY5Y,SIMA,SKNAS,SKNBE2,SKNDZ,SKNFI,SKNSH

Biliary Tract:(7)

HUCCT1,HUH28,SNU1079,SNU1196,SNU245,SNU308,SNU478

Bone:(25)

143B,A673,CADOES1,CAL78,G292CLONEA141B1,HOS,HS706T,HS737T,HS819T,HS821T,HS822T,HS863T,HS870T,HS888T,MG63,MHHES1,OUMS27,RDES,SJSA1,SKES1,SKNMC,SW1353,T173,TC71,U2OS

Breast:(58)

AU565,BT20,BT474,BT483,BT549,CAL120,CAL148,CAL51,CAL851,CAMA1,DU4475,EFM19,EFM192A,EFM192B,HCC1143,HCC1187,HCC1395,HCC1419,HCC1428,HCC1500,HCC1569,HCC1599,HCC1806,HCC1937,HCC1954,HCC202,HCC2157,HCC2218,HCC38,HCC70,HDQP1,HS274T,HS281T,HS343T,HS578T,HS606T,HS739T,HS742T,JIMT1,KPL1,MCF7,MDAMB134VI,MDAMB157,MDAMB175VII,MDAMB231,MDAMB361,MDAMB415,MDAMB436,MDAMB453,MDAMB468,OCUBM,SKBR3,T47D,UACC812,UACC893,YMB1,ZR751,ZR7530

Central Nervous System:(47)

1321N1,42MGBA,8MGBA,A172,AM38,BECKER,CAS1,CCFSTTG1,D283MED,D341MED,DAOY,DBTRG05MG,DKMG,GAMG,GI1,GMS10,GOS3,H4,HS683,KALS1,KG1C,KNS42,KNS60,KNS81,KS1,LN18,LN229,M059K,NMCG1,ONS76,SF126,SF295,SNB19,SNU1105,SNU201,SNU466,SNU626,SNU738,SW1088,SW1783,T98G,TM31,U138MG,U251MG,U87MG,YH13,YKG1

Endometrium:(25)

AN3CA,EFE184,EN,ESS1,HEC108,HEC151,HEC1A,HEC1B,HEC251,HEC265,HEC50B,HEC59,HEC6,ISHIKAWAHERAKLIO02ER,JHUEM1,JHUEM2,JHUEM3,KLE,MFE280,MFE296,MFE319,RL952,SNGM,SNU1077,TEN

Haematopoietic And Lymphoid Tissue:(172)

697,A3KAW,A4FUK,AML193,AMO1,BCP1,BDCM,BL41,BL70,BV173,CA46,CI1,CMK,CMK115,CMLT1,DAUDI,DB,DEL,DND41,DOHH2,EB1,EB2,EHEB,EJM,EM2,EOL1,F36P,GA10,GDM1,GRANTA519,HDLM2,HDMYZ,HEL,HEL9217,HH,HL60,HPBALL,HS604T,HS611T,HS616T,HS751T,HT,HUNS1,HUT102,HUT78,JEKO1,JK1,JM1,JURKAT,JURLMK1,JVM2,JVM3,K562,KARPAS299,KARPAS620,KASUMI1,KASUMI2,KASUMI6,KCL22,KE37,KE97,KG1,KHM1B,KIJK,KMH2,KMM1,KMS11,KMS12BM,KMS18,KMS20,KMS21BM,KMS26,KMS27,KMS28BM,KMS34,KO52,KOPN8,KU812,KYO1,L1236,L363,L428,L540,LAMA84,LOUCY,LP1,M07E,MC116,ME1,MEC1,MEC2,MEG01,MHHCALL2,MHHCALL3,MHHCALL4,MINO,MJ,MM1S,MOLM13,MOLM16,MOLM6,MOLP2,MOLP8,MOLT13,MOLT16,MOLT4,MONOMAC1,MONOMAC6,MOTN1,MUTZ5,MV411,NALM1,NALM19,NALM6,NB4,NCIH929,NCO2,NOMO1,NUDHL1,NUDUL1,OCIAML2,OCIAML3,OCIAML5,OCILY19,OCILY3,OCIM1,OPM2,P12ICHIKAWA,P31FUJ,P3HR1,PCM6,PEER,PF382,PFEIFFER,PL21,RAJI,RCHACV,REC1,REH,RI1,RL,RPMI6666,RPMI8226,RPMI8402,RS411,SEM,SET2,SIGM5,SKM1,SKMM2,SR786,ST486,SUDHL1,SUDHL10,SUDHL4,SUDHL5,SUDHL6,SUDHL8,SUPB15,SUPHD1,SUPM2,SUPT1,SUPT11,TALL1,TF1,THP1,TO175T,TOLEDO,U266B1,U937,UT7,WSUDLCL2

Kidney:(20)

769P,786O,A498,A704,ACHN,BFTC909,CAKI1,CAKI2,CAL54,KMRC1,KMRC2,KMRC20,KMRC3,RCC10RGB,SNU1272,TUHR10TKB,TUHR14TKB,TUHR4TKB,VMRCRCW,VMRCRCZ

Large Intestine:(56)

C2BBE1,CCK81,CL11,CL14,CL34,CL40,COLO205,COLO320,COLO320DM,COLO678,CW2,DLD1,GP2D,HCC56,HCT116,HCT15,HS675T,HS698T,HT115,HT29,HT55,KM12,LOVO,LS1034,LS123,LS180,LS411N,LS513,MDST8,NCIH508,NCIH716,NCIH747,OUMS23,RCM1,RKO,SKCO1,SNU1040,SNU175,SNU283,SNU407,SNU503,SNU61,SNUC1,SNUC2A,SNUC4,SNUC5,SW1116,SW1417,SW1463,SW403,SW48,SW480,SW620,SW837,SW948,T84

Liver:(26)

ALEXANDERCELLS,C3A,HEP3B217,HEPG2,HLE,HLF,HUH1,HUH6,HUH7,JHH1,JHH2,JHH4,JHH5,JHH6,JHH7,LI7,PLCPRF5,SKHEP1,SNU182,SNU387,SNU398,SNU423,SNU449,SNU475,SNU761,SNU878

Lung:(168)

A427,A549,ABC1,BEN,CAL12T,CALU1,CALU3,CALU6,CHAGOK1,COLO668,COLO699,CORL105,CORL23,CORL24,CORL311,CORL47,CORL88,CORL95,CPCN,DMS114,DMS153,DMS273,DMS454,DMS53,DMS79,DV90,EBC1,EPLC272H,HARA,HCC1171,HCC1195,HCC15,HCC2279,HCC2935,HCC33,HCC366,HCC4006,HCC44,HCC78,HCC827,HCC95,HLFA,HS229T,HS618T,IALM,KNS62,LC1SQSF,LCLC103H,LCLC97TM1,LK2,LOUNH91,LU65,LU99,LUDLU1,LXF289,MORCPR,MSTO,NCIH1048,NCIH1092,NCIH1105,NCIH1155,NCIH1184,NCIH1299,NCIH1339,NCIH1341,NCIH1355,NCIH1373,NCIH1385,NCIH1395,NCIH1435,NCIH1436,NCIH1437,NCIH146,NCIH1563,NCIH1568,NCIH1573,NCIH1581,NCIH1618,NCIH1623,NCIH1648,NCIH1650,NCIH1651,NCIH1666,NCIH1693,NCIH1694,NCIH1703,NCIH1734,NCIH1755,NCIH1781,NCIH1792,NCIH1793,NCIH1836,NCIH1838,NCIH1869,NCIH1876,NCIH1915,NCIH1930,NCIH1944,NCIH196,NCIH1963,NCIH1975,NCIH2009,NCIH2023,NCIH2029,NCIH2030,NCIH2066,NCIH2081,NCIH2085,NCIH2087,NCIH209,NCIH2106,NCIH211,NCIH2110,NCIH2122,NCIH2126,NCIH2141,NCIH2170,NCIH2171,NCIH2172,NCIH2196,NCIH2227,NCIH2228,NCIH226,NCIH2286,NCIH2291,NCIH23,NCIH2342,NCIH2347,NCIH2405,NCIH2444,NCIH322,NCIH358,NCIH441,NCIH446,NCIH460,NCIH510,NCIH520,NCIH522,NCIH524,NCIH526,NCIH596,NCIH647,NCIH650,NCIH661,NCIH69,NCIH727,NCIH810,NCIH82,NCIH838,NCIH841,NCIH854,NCIH889,PC14,RERFLCAD1,RERFLCAD2,RERFLCAI,RERFLCKJ,RERFLCMS,RERFLCSQ1,SBC5,SCLC21H,SHP77,SKLU1,SKMES1,SQ1,SW1271,SW1573,SW900

Oesophagus:(25)

COLO680N,ECGI10,KYSE140,KYSE150,KYSE180,KYSE270,KYSE30,KYSE410,KYSE450,KYSE510,KYSE520,KYSE70,OE19,OE33,TE1,TE10,TE11,TE14,TE15,TE4,TE5,TE6,TE8,TE9,TT

Ovary:(48)

A2780,CAOV3,CAOV4,COLO704,COV318,COV362,COV434,COV504,COV644,EFO21,EFO27,ES2,FUOV1,HEYA8,IGROV1,JHOC5,JHOM1,JHOM2B,JHOS2,JHOS4,MCAS,NIHOVCAR3,OAW28,OAW42,OC314,OC316,OV56,OV7,OV90,OVCAR3,OVCAR4,OVCAR8,OVK18,OVKATE,OVMANA,OVSAHO,OVTOKO,PA1,RMGI,RMUGS,SKOV3,SNU119,SNU840,TOV112D,TOV21G,TYKNU,UWB1289,UWB1289BRCA1

Pancreas:(43)

ASPC1,BXPC3,CAPAN1,CAPAN2,CFPAC1,DANG,HPAC,HPAFII,HS766T,HUPT3,HUPT4,KCIMOH1,KP2,KP3,KP4,L33,MIAPACA2,PANC0203,PANC0213,PANC0327,PANC0403,PANC0504,PANC0813,PANC1,PANC1005,PATU8902,PATU8988S,PATU8988T,PK1,PK45H,PK59,PL45,PSN1,QGP1,SNU213,SNU324,SNU410,SU8686,SUIT2,SW1990,T3M4,TCCPAN2,YAPC

Pleura:(9)

ACCMESO1,ISTMES1,ISTMES2,JL1,MPP89,MSTO211H,NCIH2052,NCIH2452,NCIH28

Prostate:(8)

22RV1,DU145,LNCAP,LNCAPCLONEFGC,MDAPCA2B,NCIH660,PC3,VCAP

Salivary Gland:(2)

A253,YD15

Skin:(59)

A101D,A2058,A375,C32,CHL1,CJM,COLO679,COLO741,COLO783,COLO792,COLO800,COLO818,COLO829,COLO849,G361,HMCB,HS294T,HS600T,HS688AT,HS695T,HS839T,HS852T,HS895T,HS934T,HS936T,HS939T,HS940T,HS944T,HT144,IGR1,IGR37,IGR39,IPC298,K029AX,LOXIMVI,MALME3M,MDAMB435S,MELHO,MELJUSO,MEWO,RPMI7951,RVH421,SH4,SKMEL1,SKMEL2,SKMEL24,SKMEL28,SKMEL3,SKMEL30,SKMEL31,SKMEL5,UACC257,UACC62,WM115,WM1799,WM2664,WM793,WM88,WM983B

Small Intestine:(1)

HUTU80

Soft Tissue:(16)

A204,G401,G402,GCT,HS729,HT1080,KYM1,RD,RH41,RKN,S117,SJRH30,SKLMS1,SKUT1,TE441T,TE617T

Stomach:(34)

2313287,AGS,AZ521,ECC10,ECC12,FU97,GCIY,GSS,GSU,HGC27,HS746T,HUG1N,IM95,KATOIII,KE39,LMSU,MKN1,MKN45,MKN7,MKN74,NCIN87,NUGC2,NUGC3,NUGC4,OCUM1,RERFGC1B,SH10TC,SNU1,SNU16,SNU216,SNU5,SNU520,SNU620,TGBC11TKB

Thyroid:(11)

8305C,8505C,BCPAP,BHT101,CAL62,CGTHW1,FTC133,ML1,SW579,TT,TT2609C02

Upper Aerodigestive Tract:(29)

BHY,BICR16,BICR18,BICR22,BICR31,BICR56,BICR6,CAL27,DETROIT562,FADU,HS840T,HSC2,HSC3,HSC4,PECAPJ15,PECAPJ34CLONEC12,PECAPJ41CLONED2,PECAPJ49,SCC15,SCC25,SCC4,SCC9,SNU1076,SNU1214,SNU46,SNU899,YD10B,YD38,YD8

Urinary Tract:(22)

5637,639V,647V,BC3C,BFTC905,CAL29,HS172T,HT1197,HT1376,J82,JMSU1,KMBC2,KU1919,RT112,RT11284,RT4,SCABER,SW1710,SW780,T24,UMUC3,VMCUB1

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